Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTEFIFLVLSPNQEVQRVCFVIFLFLYTAIVLGNFLIVLTVMTSRSLGSPMYFFLSYLSFMEICYSSATAPKLISDLLAERKVISWWGCMAQLFFLHFFGGTEIFLLTVMAYDHYVAICKPLSYTTIMNWQVCTVLVGIAWVGGFMHSFAQIL-------LIFHLLFCGPNVINHYFCDLVPLLKLACSDTF---LIGLLIVANGGTLSVISFGVLLASYMVILLHLRTWSSEGWC--KALST------CGSHFAVVILFFGPC--------VFNSLRPSTT-LPIDKM-VAVFYTVITAILNPVIYSLRNAEMRKAMKRLWIRTLRLNEK |
3VGA Chain:A ((21-308)) | ------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ----SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLM----------LGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI-IRSHVL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230702 for 1764 contacts (-130.8/contact) +
2D Compatibility (PS) -25274 + (NN) -7395 + (LL) 4836
1D Compatibility (HY) -25600 + (ID) 3300
Total energy: -287435.0 ( -162.95 by residue)
QMean score : 0.350
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