Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENKTEVTQFILLGLTNDSELQVPLFITFPFIYIITLVGNLGIIVLIFWDSCLHNPMYFFLSNLSLVDFCYSSAVTPIVMAGFLIEDKVISYNACAAQMYI--FVAFATVEN-YLLASMAYDRYAAVCKPLHYTTTMTTTVCARLAIGSYLCGFLNASIHTGDTFSLSFC--KSNEVHHFFCDIPAVMVLSCSDRHISELV-LIYVVSFNIF----IALLVILISYTFIFITILKM------------HSASVYQKPLSTCASHFIAVGIFYGTII-------FMYLQPSSSHSMDTDKMAPVFYTMVIPMLNPLVYSLRNKEVKSAFKKVVEKAKLSVGWSV |
| 3VG9 Chain:A ((16-304)) | -------------------------------IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-----FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR-AKGIIA--ICWVLSFAIGLTPMLGWNNCGQ------SQGCGEGQVACL------FEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -232044 for 1822 contacts (-127.4/contact) +
2D Compatibility (PS) -25026 + (NN) 3107 + (LL) 3996
1D Compatibility (HY) -23600 + (ID) 3450
Total energy: -277017.0 ( -152.04 by residue)
QMean score : 0.271
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