Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATVNTDATDKDISKFKVTFTLVVSGIECITGILGSGFITAIYGAEWARGKTLPTGDRIMLMLSFSRLLLQIWMMLENIFSLLFRIVYNQNSVYILFKVITVFLNHSNLWFAAWLKVFYCLRIANFNHPLFFLMKRKIIVLMPWLLRLSVLVSLSFSFPLSRDVFNVYVNSSIPIPSSNSTEKKYF----SETNM-VNL-V-FFYNMGIFVPLIMFILAATLLILSLKRHTLHMGSNAT-----------------------------------------------------------------------------------------------------------------------------------------------------GSRDPSMKAHIGAIKATSYFLILYIFNAIALFLS-TSNIF-----DTYSSWNILCKIIMAAYPAGHSVQLILGNPGLRRAWKRFQHQVPLYLKGQTL |
| 3EML Chain:A ((18-472)) | --------------IMGSSVYITVELAIAVLAILGNVLVCWAVWLNS---NLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIR---IPLRYN-GLVTGTRAKGIIAICWVLSFAIGLTPMLGWN-N---CGQ-----SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206860 for 2109 contacts (-98.1/contact) +
2D Compatibility (PS) -29116 + (NN) -9775 + (LL) 1568
1D Compatibility (HY) -16400 + (ID) 1450
Total energy: -262033.0 ( -124.25 by residue)
QMean score : 0.243
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