Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------AVANCGQVVS--YLAPCISYAMGRVSVPGGG-----------------CCSGVRGLNAAAATPADRKTTCTCLKQQASGMGGIKP-----------NLVAGIPGKCGVNIPYAISPRTDCSKVR
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM--------ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26466 for 520 contacts (-50.9/contact) +
2D Compatibility (PS) -8727 + (NN) -2861 + (LL) 552
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -41052.0 ( -78.95 by residue)
QMean score : 0.126
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: