Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------QAPPPVQCDPGKLSACAVPI-----------FFGTAPSKSCCSNLRAQEKDGCFCQYARDPMYASYI----------NSTNARNTIAACGIAFPSC
2FSD Chain:A ((4-113))
DIPWTDLNRASGVGSTGILQARIINGVIYVRGNSIPVPNVAPNFIVPVGTFPPAFG-TNLPQFDSSGTFYSHGNLSLSLINMSPSGIAVGNPNNTSMNGKTISFALSAPLL
General information:
TITO was launched using:
RESULT:
Template:
2FSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29977 for 420 contacts (-71.4/contact) +
2D Compatibility (PS) -7965 + (NN) 1265 + (LL) 56
1D Compatibility (HY) -400 + (ID) 600
Total energy: -37621.0 ( -89.57 by residue)
QMean score : 0.124
(partial model without unconserved sides chains):
PDB file :
Tito_2FSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FSD-query.scw
PDB file :
Tito_Scwrl_2FSD.pdb
: