Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--RVVKGSGEEVNVTCDATQLSSCVTAV-----STGAPPSTDCCGKLKEHETCLCTYIQN--PLYSSYVTSPNARKTLAACDVAYPTC---
2JYS Chain:A ((8-98))
QPLEAEIKGTKLKAHWDSGATITCVPEAFLEDERPIQTMLIKTIHGEKQQDVYYLTFKVQGRKVEAEVLASPYDYILLNPSDVPWLMKKPL
General information:
TITO was launched using:
RESULT:
Template:
2JYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12540 for 493 contacts (-25.4/contact) +
2D Compatibility (PS) -8574 + (NN) -1026 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -24290.0 ( -49.27 by residue)
QMean score : 0.251
(partial model without unconserved sides chains):
PDB file :
Tito_2JYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JYS-query.scw
PDB file :
Tito_Scwrl_2JYS.pdb
: