Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPLGTCGAQLSQLAPCARYSVPPLPGQALPAPGPECCSALGSVSR----------DCACGA----------IDIINSLPAKCGLPRVSCQ
1SIY Chain:A ((2-76))
-----TCGQVQGNLAQCIGFLQKG--G----VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVN-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23222 for 365 contacts (-63.6/contact) +
2D Compatibility (PS) -5645 + (NN) -4554 + (LL) 620
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -36851.0 ( -100.96 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: