Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------AGECGRVPVDQVALK---LAPCAAATQNPR-----------------AAVPPNCCAQVRSIGRNPKCLCAVMLSNTA---------RSAGVKPAVAMTIPKRCAIANRPIGYKCGPYTLP----
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQ---RCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22900 for 528 contacts (-43.4/contact) +
2D Compatibility (PS) -9368 + (NN) -5776 + (LL) 124
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -40570.0 ( -76.84 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: