Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------VPGQGTCQGDIEGL-MKECAVYVQRPG---------------PKVNPSEACCRVVKR--SDIPCACGRITASVQQMID-----------MDKVVHVTAFCGKPLAHGTKCGSYVVP----
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--APQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30885 for 518 contacts (-59.6/contact) +
2D Compatibility (PS) -8967 + (NN) -2739 + (LL) 320
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -46421.0 ( -89.62 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: