Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAA--------RTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISIST-DCSKVR--------
2NQW Chain:A ((7-93))
LP------------FKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYE---------PFRFQVTQMDKRRIIEIKIFPFE
General information:
TITO was launched using:
RESULT:
Template:
2NQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22061 for 419 contacts (-52.7/contact) +
2D Compatibility (PS) -7641 + (NN) -4683 + (LL) 1020
1D Compatibility (HY) -4400 + (ID) 250
Total energy: -38015.0 ( -90.73 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_2NQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NQW-query.scw
PDB file :
Tito_Scwrl_2NQW.pdb
: