Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------AISCGQITSA--LAPCIAYLKGNGAG----------------SAPPACCNGIRSLNSAAKTTPDRQAACSCIKSA---ATGISGINYSTAAGLPGKCGINIPYK---ISPSTDCKSIK
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26182 for 580 contacts (-45.1/contact) +
2D Compatibility (PS) -8948 + (NN) 3287 + (LL) 240
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -33453.0 ( -57.68 by residue)
QMean score : 0.181
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: