Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPLPPCTVIVNQL----NPCVPFLTRNVATPSQTCCGGVRYLANYSS-SKGDRISICQCIEGSQSMF-------PLIDFSLISNLPAS-----CSVP--ITLPKITPTFDCSTV---------------------
4CHD Chain:A ((8-142))
DPFSRAKSLLKSTILHAERCKEFVGNMLEEYQDPAETTVQSLVPINTWGKSAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGSIQDRDKKQTNVPRAFMLRGSQIEYDMKATRGLVVDTTNRIIVGGETVLRE
General information:
TITO was launched using:
RESULT:
Template:
4CHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64103 for 653 contacts (-98.2/contact) +
2D Compatibility (PS) -9207 + (NN) 3766 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -72594.0 ( -111.17 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_4CHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CHD-query.scw
PDB file :
Tito_Scwrl_4CHD.pdb
: