Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------AIGCGTVVSY--LNSCFPYVTGTG-----------------------ALGGCCKGIKDLYAAAQTTADRQSVCDCLKDLAASTTGVD----------LGKAAGLPSQCGLNIPYKIIPSTDCSKVQ
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQ--TRTN-----
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35057 for 574 contacts (-61.1/contact) +
2D Compatibility (PS) -7294 + (NN) 832 + (LL) 1704
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -44315.0 ( -77.20 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: