Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------LSCGQVTS--GLAPCLPYLQGRG-------------------PIGGCCGGIKGLLGAAKTPADRKTACTCLKSAASAI-----------KGINVGKAAGIPRLCGVNIPYK---ISPSTDCSKVR
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM--------ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26365 for 489 contacts (-53.9/contact) +
2D Compatibility (PS) -7886 + (NN) 1301 + (LL) 768
1D Compatibility (HY) -400 + (ID) 750
Total energy: -33332.0 ( -68.16 by residue)
QMean score : 0.095
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: