Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------AITCGQVSSA---LSSCLGYLK-------------NGGAVPPGCCSGIKNLNSAAQTTADRQAACKCLKTFSNSIPGIN-----LGLASGLPGKCGVSVPYKISPSTDCSKVT
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCM--------CPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39499 for 488 contacts (-80.9/contact) +
2D Compatibility (PS) -7027 + (NN) 680 + (LL) 1168
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -50878.0 ( -104.26 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: