Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------DISCSDVLND--LSPCLPFLQGKAAK------------------PSESNNQCCDGVRALYAAADTRPDRQATCRCLKAAYVQVHA-----------VLSAAQELPGDCGLSLSYNITPDIDCDKIE
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVK--------QVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26878 for 608 contacts (-44.2/contact) +
2D Compatibility (PS) -8382 + (NN) -4873 + (LL) 1300
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -42083.0 ( -69.22 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: