Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------QSCNTDL-TDLVSKCQRFVIKTGPKFSPSP-------------------SCCAVVKNVDVACVCDLITKEIEDMIDMDKMVYVARSCGKKISAGTKCGNTQANAGGIVSGYIVPTA
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLH------GEESERVAQRAGEIVSSCGVRCMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35568 for 671 contacts (-53.0/contact) +
2D Compatibility (PS) -9018 + (NN) -581 + (LL) 556
1D Compatibility (HY) 400 + (ID) 1000
Total energy: -45211.0 ( -67.38 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: