Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----QSSSSCTNVLVS---MSPCLDYIQGNSSKPS------------SSCCSQLANVVRSQPQCLCEVLNGGASSL----GVSVNQTQAMALPTACNVKTPPASQCNATIL
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMS---QPCQM---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35567 for 520 contacts (-68.4/contact) +
2D Compatibility (PS) -7808 + (NN) -1439 + (LL) 560
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -49204.0 ( -94.62 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: