Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCPE----VSKALVPCVTYLAT--------GSSFVHCCTQIRLLNSKANTTSDRQGVCRCLTSLAAQFQRRH----------RLNFNLVKQLP-GKCNVNIRYNIT-TQNPNCSQVK-----
1HSS Chain:A ((5-124))
-MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI--------SEWCRCGALYSMLDS--MYKEHGAFPRCRREVVKLTAASITA-VCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61993 for 562 contacts (-110.3/contact) +
2D Compatibility (PS) -8329 + (NN) -4035 + (LL) 352
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -78755.0 ( -140.13 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: