Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AGECGKSSPDNEAIK----LAPCAEAAQDQ------------NAAVSASCCDQVRKIGRSPSCLCAVMLS-----NTAKASGIKPEIAITIPKRCNIANRPVGYKCGPYTLP
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ----PCQM----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28839 for 539 contacts (-53.5/contact) +
2D Compatibility (PS) -8199 + (NN) -379 + (LL) 80
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -42837.0 ( -79.47 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: