Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------ACNAMTLQPCLAAS----------------------QGKVAPDPACCTAIKNIGLSADGPQCLCTLATGPLAKANGVS----------ADAAMAIPKKCGLPVPKGFMCNNKPVPGS
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVR-----DECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38114 for 550 contacts (-69.3/contact) +
2D Compatibility (PS) -7870 + (NN) -5972 + (LL) -260
1D Compatibility (HY) -800 + (ID) 700
Total energy: -53716.0 ( -97.67 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: