Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------ALSCSTVYNT--LMPCLGYVQ------------------SGGTVPRACCTGIKRLVSGARSTQDRRTVCVC--LKNVSSGAKGGPYLTRAAGLPARCGVPLPYK---TGPNDSCSSIPIYW
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36540 for 560 contacts (-65.2/contact) +
2D Compatibility (PS) -9029 + (NN) 1994 + (LL) 488
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -46137.0 ( -82.39 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: