Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------LTCGQV--NSAVGPCIAYVRGTGAGPSG---------------------ACCSGVRSLNSQARSTADKRTACNCLKTAARGVKGLD----------VGKASSIPSKCGVNIPYTISPNIDCSRV
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28895 for 569 contacts (-50.8/contact) +
2D Compatibility (PS) -7691 + (NN) -2246 + (LL) 872
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -41310.0 ( -72.60 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: