Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------DDDTTLDCDSQV-NGLVGNCMTAVLIGTKPS----------------------SKCCKFVRAAQPDCVCPKITGDVTKVLK------------LSTALKIAKRCNRELPHNYQCGSYTLP
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-----
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23614 for 612 contacts (-38.6/contact) +
2D Compatibility (PS) -8308 + (NN) -4055 + (LL) 152
1D Compatibility (HY) -800 + (ID) 600
Total energy: -37225.0 ( -60.83 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: