Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------QQLPQGCGPKLGV--LLPCLPFLQGQGSNP---------------------TQPCCNGLETVVKLNPACLCALVNSQLGNRIN------------ITLALSLPSLCNLAGVTIDLCNPTGKFSFKI
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62583 for 602 contacts (-104.0/contact) +
2D Compatibility (PS) -8067 + (NN) -2164 + (LL) 740
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -74574.0 ( -123.88 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: