Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDCSAAQQAMFPCLSAAVGGNPPPPSVACCAAMKSVSK--------LEMCQCLVNQTSTVPGLNMTAARNIPANCNISAAADCS
1SIY Chain:A ((1-77))
-MTCGQVQGNLAQCIGFLQKG--GVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNI-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40433 for 499 contacts (-81.0/contact) +
2D Compatibility (PS) -7628 + (NN) -7649 + (LL) 164
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -61146.0 ( -122.54 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: