Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSAAKCKEERRLGINACKAVVYGKSPTPACCHRMRVTHLGC--VCSVITPKLAALVDVNR--------MIELVKGCGRKLPRHYKCGSITFP
1GH5 Chain:A ((1-87))
MINRTDCNENSYLEIHN------NEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNPGHIHEILSIRIY
General information:
TITO was launched using:
RESULT:
Template:
1GH5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65017 for 530 contacts (-122.7/contact) +
2D Compatibility (PS) -8201 + (NN) 804 + (LL) 740
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -74724.0 ( -140.99 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_1GH5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH5-query.scw
PDB file :
Tito_Scwrl_1GH5.pdb
: