Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------ALSCPQV--QLTVVPCLGYLRNPGPSVP---------------------APCCNGLRGLNNQAKTTPERQSVCRCLKTTAQSLSGLN----------VPALATLPKKCGVNLPYKISTAIDCNTVKY
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDE--------CQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32310 for 584 contacts (-55.3/contact) +
2D Compatibility (PS) -7850 + (NN) -1705 + (LL) 1000
1D Compatibility (HY) -400 + (ID) 800
Total energy: -42065.0 ( -72.03 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: