Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KKDLPFCNVELLPCVLPFKVRGHGSKLPNGCCEKMKK------S-----TSCMCRFLMAKER-DLNA-AAHRIFWFCKISVPNCPKI
1AFH Chain:A ((10-80))
---------AIAPCI-SYARGQ-GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30109 for 387 contacts (-77.8/contact) +
2D Compatibility (PS) -6186 + (NN) -5744 + (LL) 712
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -43827.0 ( -113.25 by residue)
QMean score : 0.212
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: