Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SPIKVVGAKKELPFCNLDLLACVQPFLVNGHGGKLPKGCCEKMKK------S-----TSCMCRFLTAKE---QNLN-AAAHRIFWFCHISVPNCPKI
1AFH Chain:A ((10-80))
-----------------AIAPCIS-YARGQ-GSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIP-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45274 for 362 contacts (-125.1/contact) +
2D Compatibility (PS) -5942 + (NN) -3434 + (LL) 1248
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -56952.0 ( -157.33 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: