Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADNLYLYKGSVKITEMTLNLNEAKIIVYEDSGGNKYTLDASGISTLTNIDDIKLSDLLEGKVKFIYQKKDSNAIQIKGLGNIISTLLATQKAVDGESILAEEVSKKPVVDTILKATDLVNLNKNIVETELEDKFVKKDASNLTDAVNQKAFAEKILPAKDGQKSILVEKLGGLLGEPGAVYGDSNPKITAKDFLAEKASLVKTDGSNIVT------QTDKGKALVEAILNAK--EPISNKEVKIVET----ELAKTFVKTADLGTPAVA---------GKVLDAKDGQKSILVEKLGRFLDTTSTEYSN--QTAK---VFSGEKGTKPTAEEVVTKLLANNKKDLTDEVAQNPGLRAAVTSNSGLRGTVIDNLKGDTDFKTDITIQVDAKDPAFQGFVREIISQPSFEIPTSDDAPLSWDWI |
4RJJ Chain:A ((46-235)) | ------------------------------------------------------------------------------------------------------------------------------------------------DALQDKG-PEIIVARHEQNAAFMAQAVGRLTGKPGVVLVTSGPGASN---LATGLLTANTEGDPVVALAGNVIRADRLKRTHQSLDNAALFQPITKYSVEVQDVKNIPEAVTNAFRIASAGQAGAAFVSFPQDVVNEVTNTKN-VRAVAAPKLGPAADDAISAAIAKIQTAKLPVVLVGMKGGRPEAIKAVRKLLKKVQLPFVETYQAAGTLSRDLEDQYFGRIGLFRNQPGDLLLEQADVVLTIGYDPIEYDPKFWNINGDRTIIHLDEIIADIDHAY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RJJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 26893 for 994 contacts (27.1/contact) +
2D Compatibility (PS) -16382 + (NN) 5282 + (LL) 9996
1D Compatibility (HY) -2000 + (ID) 2450
Total energy: 21339.0 ( 21.47 by residue)
QMean score : 0.173
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