Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANEHLNLFSLENSDYIYADYNATFPVSDSVKESILEVLSKQ--VLNPSSL-HRKGQEARRILQDARDNIRSAIGVPSNKEIVFTSGATEANSLVMKGIAGF-----QHVI-SAVEHPSILNSACN---------PHIIPVNQGGIVDLLALERILSELKGNRVIVSVMMANNETGVVQPVKEIAEIAHKFETIYHTDAAQSVGKIKVNMEDLGMDLLTLSAHKFGGIAGSGVLIFNKD--LVIEPIIVGGGQEKGLRGGTENIVAIAGLSAALQ-SISNLLSKMDEIKELRDQLEYELLNLASGIKIFGKNSKRLPNTSLIYMPGVKSDVQLMNFDLNNIAVSNGSACSSGKVEPSHVLLAMGATREQAECSIRVSIGPQTKPRDIRKIVDCWYNIYEKNILDMRK |
| 3LVJ Chain:A ((24-390)) | ----------------IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP-REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDT-CRQLEREGFEVTYLAP-QRNGIIDLKELE---AAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEE-VYLNGDLEHGAPNILNVSFNYVEGESLIMA--LKDLAVSSG------SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LVJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167168 for 2963 contacts (-56.4/contact) +
2D Compatibility (PS) -37674 + (NN) -15863 + (LL) 1548
1D Compatibility (HY) -23600 + (ID) 6250
Total energy: -249007.0 ( -84.04 by residue)
QMean score : 0.513
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