Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILLELQFYLSLPHIFSYQQMHKNEEISEAKTSRNAEEVKEIVKTQLEGLKQ---LKKQLKQKLGV
4DVZ Chain:A ((582-637))
---------FLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKL--
General information:
TITO was launched using:
RESULT:
Template:
4DVZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9193 for 266 contacts (34.6/contact) +
2D Compatibility (PS) -5801 + (NN) -3480 + (LL) 1288
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -1200.0 ( -4.51 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4DVZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DVZ-query.scw
PDB file :
Tito_Scwrl_4DVZ.pdb
: