Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKSDILCKRVIGIVGSGQLGKMTAIAATKLGQETHIFANAKDDPACSVANNLTIADFSDKKALESFAQSVSLVTIESENIPCDAIDIMSQYVDFYPGKRALHISQNRLREKDFIRNLGIRTADYKSIQDHNDLLEVTRAFG---YPTRLKTTEMGYDGKGQYMIGNDSQVERFASFDWNAQYILEASVDLLKEVSIVVTRDKNGKVAFFPVAENHHVDGILDTSIVPAKV-DSKLVQEIQQTAEKIADALDVVGILAIEFFITKNSELLVNELAPRPHNSCHWSLDACNVSQFEQLIRVICKLPMQEVVLRFPCMTKNIIGN-------------DVYNTYKYLSDKRANLTIYGKKEVRGRRKMGHVNIDLS |
4E4T Chain:A ((29-395)) | --VSPILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFENVPAASLDFLARTTFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAVLPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNPRQHSPAAMLNILGDVWFPNGAAAGAVTPPWDTVAAM--PAAHLHLYGKEEARVGRKMGHVNFTAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4E4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185954 for 3049 contacts (-61.0/contact) +
2D Compatibility (PS) -38263 + (NN) -9570 + (LL) 76
1D Compatibility (HY) -17200 + (ID) 6450
Total energy: -257361.0 ( -84.41 by residue)
QMean score : 0.448
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