Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFKSLTESLNSVFNKLKGKSIISEDDFNLAIREIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKVVQDNLITILGLEKSDLNLGANPPAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDIQTLSTVTDEK-PTAITKRALAAAKNDNYDVLILDTAGRLHIDDNMMNELKTVKKIASPAEVILVADAMIGQDAVNIAKSFNETIGVTG-IILTRVDGDARGGAALSMKMVTNCPIKFIACGEKLSDLDDFYPDRIAKRILDMGDVISLVERAAEIVGQEEFDKLQKKVKKGRLDLNDLVRMLKTLKKMDGISNIMKFIPSSFTKKLSSGVPDDSKVKKYIAIINSMTEKERQDPNILNGKRRLRIAKGSGTRVPDVNLLIKQYDQMSAMVNKFSKVDHSKFKESDLMDMLSRK
3NDB Chain:B ((4-426))----LGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK--KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKTEESID-AIMRGKFTLNELMTQLEAIENM--------------------LT--EAKIKKYKVIISSMTKEERENPKIIKASRIRRIARGSGTTENDVREVLRYYETTKNAIDKLRKGLALALLLLLLALAL---


General information:
TITO was launched using:
RESULT:

Template: 3NDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -209619 for 3141 contacts (-66.7/contact) +
2D Compatibility (PS) -42382 + (NN) -18481 + (LL) 1192
1D Compatibility (HY) -26800 + (ID) 7900
Total energy: -303990.0 ( -96.78 by residue)
QMean score : 0.543

(partial model without unconserved sides chains):
PDB file : Tito_3NDB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3NDB-query.scw
PDB file : Tito_Scwrl_3NDB.pdb: