Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIKVQRKKMELGAEVADQFLSEMNQTKIKIQDAKEATETARNVSKSFAQNAKDKNTELHDKVVNFTKKAETASENAEDFAREAFLSKQSTKTLKQETKEL
1PSM Chain:A ((4-34))
------------------------KKAKQASQDAEQAAKDAENASKEAEEAAKEAVNLK------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6787 for 116 contacts (58.5/contact) +
2D Compatibility (PS) -3163 + (NN) 61 + (LL) 5728
1D Compatibility (HY) 1600 + (ID) 550
Total energy: 10463.0 ( 90.20 by residue)
QMean score : 0.343
(partial model without unconserved sides chains):
PDB file :
Tito_1PSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSM-query.scw
PDB file :
Tito_Scwrl_1PSM.pdb
: