Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNRIVIGISGASGSIYGMHILKALKGADCETHLVISRAGKTTIAHE----ITERLEDITSLADFY----------YSEEKIGEKIASGSFKTSGMIVAPCSMKTMSEIASGVTSNLLTRAADVTLKERRKLVLIVRESPLHLGHLQNMLKLTEMGAIIAPPMPAFYTKPKSLEDIISHSISKVLSLFDIKLPDFKEWQGV
4ZAW Chain:A ((6-200))
---RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQ
General information:
TITO was launched using:
RESULT:
Template:
4ZAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139006 for 1444 contacts (-96.3/contact) +
2D Compatibility (PS) -19294 + (NN) -6812 + (LL) 48
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -183714.0 ( -127.23 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4ZAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZAW-query.scw
PDB file :
Tito_Scwrl_4ZAW.pdb
: