Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLFDCLIIFIIVVCIIISITRGFIKELCALMFLFLSAFLTANHYDFFTINYSKYFNSKAMQNIFSTISVFIIFNLIFMIVNNWLMYILTPIRLGLIDRVTGTFVGALRGVLLSYVLFFAMHLYCYTVHDKKEEQSKIEAEDILPNWIINSYSYQALFATVEDIVDVYVPESLILKIKEIGEGMANQEKLKGDKKEE |
1AFO Chain:A ((73-88)) | --------------------------------------------------------------------------------------------------ITLIIFGVMAGVIGTI---------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AFO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3525 for 54 contacts (-65.3/contact) +
2D Compatibility (PS) -1452 + (NN) 897 + (LL) 17324
1D Compatibility (HY) -2400 + (ID) 200
Total energy: 10644.0 ( 197.11 by residue)
QMean score : 0.086
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