Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMFIILAAGHGKRMNSGLPKVLHKIGNFSMLQHIIYNARQLNPENISVVANL--PLIERLKCLEDIQLITQESTLGTGDAVKTAVRNMKELSDSNIIVVQYGDTPLIKNSTITQMVSCLEGKALVCLGFKTSNKE-YGRLIIENGSLREIVETQDDENSDEEFL--ANAGIMVAYAKNLRELVEKIECNGSTYEYYLTDIVSIAVKSNLNVGYV-TTDEEEATGINSRNDLAKAEFYFQENRRKFFTDSGVTLVAPE------TVFFSLDTQIGMDSIIYPYVFFGPGVRIGPG-----------AKIGPFTKCEDTTIGDGAI------------------VGNFVEAKASDIGTNTKIKHLSYIGNTEVGRESNIGAGTVVCNYDGKKKHRTNIGSNCFVGANSSLIAPLNVHDESVIAAGSIIVKDVPKKRLVITRRKQMVKKIK
2VD4 Chain:A ((9-443))--VILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANEQVNWVLQTEQLGTAHAVQQAAPFFK---DNENIVVLYGDAPLITKETLEKLIEAKPENGIALLTVNLDNPTGYGRIIRENGNVVAIVE-QKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENELVITRVAQRHIQGW


General information:
TITO was launched using:
RESULT:

Template: 2VD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		3D Compatibility (PKB) -243304 for 3032 contacts (-80.2/contact) +
2D Compatibility (PS) -42906 + (NN) -14041 + (LL) 644
1D Compatibility (HY) -30000 + (ID) 7850
Total energy: -337457.0 ( -111.30 by residue)
QMean score : 0.453

(partial model without unconserved sides chains):
PDB file : Tito_2VD4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2VD4-query.scw
PDB file : Tito_Scwrl_2VD4.pdb: