Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHLIVGLGNPGSQYELTYHNIGFIIVDAICKHWNFQ-SFSKKADCLITSSVINDNKIMLMKPYSFMNNSGIPVARIRNFYKFSLDNVIVIHDDADLEPGRIKIKKGGGSAGHNGLKSIDSSIGN-DYWRLRFGIGRSDSQRSLADYVLSKFSNLD--DVIPLVERIAQNIHLMLQGNNIAFTNSIV
2Z2K Chain:A ((6-178))
--LVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQG---------
General information:
TITO was launched using:
RESULT:
Template:
2Z2K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132102 for 1399 contacts (-94.4/contact) +
2D Compatibility (PS) -17781 + (NN) -430 + (LL) 344
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -163569.0 ( -116.92 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_2Z2K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z2K-query.scw
PDB file :
Tito_Scwrl_2Z2K.pdb
: