Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFVMDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTVKYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKRHYER
1LRY Chain:A ((3-165))
---LNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD--LSEDKSEPRVF--------INPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ---
General information:
TITO was launched using:
RESULT:
Template:
1LRY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87895 for 1260 contacts (-69.8/contact) +
2D Compatibility (PS) -17509 + (NN) -1368 + (LL) 1168
1D Compatibility (HY) -11200 + (ID) 3800
Total energy: -120604.0 ( -95.72 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1LRY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LRY-query.scw
PDB file :
Tito_Scwrl_1LRY.pdb
: