Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISG----SKNYDIDSVSVIGENLVIATINGVNSRNEAEFLRNKKLYVERNKLLKLNDENEFYQSDLVNMEIRLENDELYGYIKSIYNFGSGDILEISVIS---TKKNIMLPFTKEIFPYVNIKERYITLNMPEFIG
2F1L Chain:A ((19-187))
---DLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG-RLHGKVLAAKLKGLDDREEARTFTGYEICIPRSELPS------YYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF-
General information:
TITO was launched using:
RESULT:
Template:
2F1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99605 for 1136 contacts (-87.7/contact) +
2D Compatibility (PS) -17033 + (NN) -2349 + (LL) 144
1D Compatibility (HY) -12400 + (ID) 1600
Total energy: -132843.0 ( -116.94 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_2F1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F1L-query.scw
PDB file :
Tito_Scwrl_2F1L.pdb
: