Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSRVKVNKDNKNANSGKQARFDLNRMNFMINGKIVDKEYIIRLYGENNYLIPNGSEDYRLFAKRVFTGMFEYAKAEVPNNRILEKLVINCNQAGYEFAIYE
3PQS Chain:A ((405-453))
------VAEADNNRESGYRSEFDVNFGDKKVSGKLFDKGGIVPVFMINADIKGNGFTGTANTTDTGFALDSGSSQHGNAVFSDIKVNGGFYGPTAGELGGQF
General information:
TITO was launched using:
RESULT:
Template:
3PQS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8834 for 242 contacts (36.5/contact) +
2D Compatibility (PS) -4899 + (NN) 1383 + (LL) 712
1D Compatibility (HY) -2000 + (ID) 750
Total energy: 3280.0 ( 13.55 by residue)
QMean score : -0.066
(partial model without unconserved sides chains):
PDB file :
Tito_3PQS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PQS-query.scw
PDB file :
Tito_Scwrl_3PQS.pdb
: