Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFAVEQAKLAKKNDEIPIGAVIVSGDNIISFAHNI---SNDPTAHAEMLVIRQACELLSTSVLCNADMYVTLEPCPMCAQAISFARIKRLYFGAYNSKGGGIENGAKIF--QFCSHVPEVYGGVLETECSFLLKDFFEKLRDSTNYY
2NX8 Chain:A ((20-162))
MQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKIA
General information:
TITO was launched using:
RESULT:
Template:
2NX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120394 for 1191 contacts (-101.1/contact) +
2D Compatibility (PS) -15275 + (NN) -11183 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 2500
Total energy: -158952.0 ( -133.46 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_2NX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NX8-query.scw
PDB file :
Tito_Scwrl_2NX8.pdb
: