Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKVGVIGCSGRMGKRILNELITNTQVEIAGAVARLGSKYIGSDIGSAVYHSSNLGIKVTSSISDVFESSDVVIDFTTKECMLACLKAAMKFKTPLVSGTTGIESINLKKYAAKIPI---LWSANMSVGVNVLLKLVKKAAEFLDNEYDVEIWEMHHNLKKDSPSGTAMEFGKAIANALKVDFQP---YQHSHNSSNIREKGKIGFAVSRGGGVVGDHSVMFINSDERIELNHKAIDRTTFARGAVRAAIWLYENKRETPGLYSMQDVI
1DRU Chain:A ((6-268))
--IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGE-LAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGE-RVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKE---SGLFDMRDVL
General information:
TITO was launched using:
RESULT:
Template:
1DRU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170457 for 2064 contacts (-82.6/contact) +
2D Compatibility (PS) -27653 + (NN) -12328 + (LL) 876
1D Compatibility (HY) -16000 + (ID) 5250
Total energy: -230812.0 ( -111.83 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1DRU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DRU-query.scw
PDB file :
Tito_Scwrl_1DRU.pdb
: