Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVDSHCHLIYFSDDEIPEVISRAEQNGVKILHNICVNADDVPKLLKIASSYNQVYSSIGIHPLDASVENGKCMHADELVELIKNQKVVSIGETGLDFYKS-NNKSNQKKSFASHIEAARITGLPLVIHTRGVDSEVIDMLKSEMKNGPFNGVMHCFTSSKELAHQSIDLGLYISFSGIITFKNASL-LRRIAQDVPRERVLVETDAPY-----LSPEPHRGKKNEPAMVKYVVDCLAELWSASPDKVAEVTTNNFFRLFTKLKLKEIL
4P5U Chain:A ((19-256))
------------------DVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEA--IIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLP-GAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKP-SSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAFLE---
General information:
TITO was launched using:
RESULT:
Template:
4P5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127971 for 1902 contacts (-67.3/contact) +
2D Compatibility (PS) -24970 + (NN) -13182 + (LL) 1732
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -180691.0 ( -95.00 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4P5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P5U-query.scw
PDB file :
Tito_Scwrl_4P5U.pdb
: