Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDKMYEECGVFGISCNKDSAFDSILGLHALQHRGQESFGV-VTSNNDKLHSYHFQGQVSSVLDNIDEIKKSLPGNYAIGHVRYSTSGNKSGVQPILGKSNKFGDFAIAHNGNLINISPIREQLIKQGRVFQSDIDTEVVARLVEANTKN--SFLGSFIYALKQIQGAYSFVAINR---EVVVGVRDSAGIRPLVLGKLNSSYVLASETCALDIVNAEFIREIEPGELVTIDQNGNLASAFPLSQQKSSFCIFEYIYFSRPDSIIEDRSIYDIRKEIGRTLAEESPPKNNVDMVVPIPDSGIPAAIGYTKYSGLPIELGIIRNHYIGRTFIQPTAEVRKVRIKLKFNANKDILKGKNIILIDDSIVRGSTLKSIIVMLKDAGVKEIHLKISSPPIKYSCFYGIDTPECKDLIAASKSVREIEAIIGVNSLTFLSIDGLYQAVNGEKRNNTAPQYCDACFTGDYPIGK |
4AMV Chain:A ((2-217)) | --------CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEE--HPLHGGTGIAHTRWATHGEPSEVN---AHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGS---PLVIGLGMGENFIASDQLALLPVTRRFIF-LEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKGLDASIEHDIVHGLQALPSRIEQMLSQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145036 for 1896 contacts (-76.5/contact) +
2D Compatibility (PS) -23077 + (NN) -10976 + (LL) 1624
1D Compatibility (HY) -9600 + (ID) 3250
Total energy: -190315.0 ( -100.38 by residue)
QMean score : 0.582
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