Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNIL-KYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDR--NPGGDTI-IGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
3TIS Chain:A ((1-174))
------SDVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKS---GNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLD
General information:
TITO was launched using:
RESULT:
Template:
3TIS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142704 for 1373 contacts (-103.9/contact) +
2D Compatibility (PS) -18162 + (NN) -2768 + (LL) 376
1D Compatibility (HY) -18000 + (ID) 3550
Total energy: -184808.0 ( -134.60 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_3TIS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIS-query.scw
PDB file :
Tito_Scwrl_3TIS.pdb
: