Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRRITLNSNFMFGASDIKSLPNESAPEIAFAGRSNVGKSSLINLLINSKKAARVSSKPGCTRQINFYSMYNDKFRLVDLPGYGCSHASKDETIQYLGLVEYYLIHRRNLRRVFVLIDSKVRLKEIDKDFIYWLTYNNINFDVVLTKIDKVDRENLDAIIESTRKWINNESVSIRQISVRVKYEMTKVRDEFFKFTR
1SVW Chain:A ((6-164))
--------SEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY-IINDELHFVDVPGYGFAK---SEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI
General information:
TITO was launched using:
RESULT:
Template:
1SVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98821 for 1160 contacts (-85.2/contact) +
2D Compatibility (PS) -16379 + (NN) -4429 + (LL) 1104
1D Compatibility (HY) -10400 + (ID) 3050
Total energy: -131975.0 ( -113.77 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1SVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVW-query.scw
PDB file :
Tito_Scwrl_1SVW.pdb
: