Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNFKSVVLCILDGWGNGIGDSKYNAISNANPPCWQYISSNYPRCSLSACGTDVGLPDGQIGNSEVGHMNICSGRVVMQSLQRIDREIKTIE--NNKNLRSFISDLKDKNGVCHIMGLVSDGGVHSHQKHISTLANKISQHEI-KVVIHAFLDGRDTLPNSGKKCVQEFEENIKGNDIRI---ATVSGRYYAMDRDNRWERTIETYEAIAFARATCHNNVMSLIDNNYQNNITDEFIRPTVIGDYK-GIELKDGVLLANFRADRMIQLASILLGKT--GY-TEVAKFSSILSMMKYKEDLQIPCLFPPAFFTNTLGEIIADNKLRQLRIAETEKYAHVTFFFNCGKEEPFSNEERILIPSPKVETYDLQPEMSAFELTEKLVGKIRSQEFTLIVANYANPDMVGHTGNMEAAKKAVLAVDDCLAKVLNTVKEINDAVLIVTADHGNVECMFDEKNNTPHTAHTLNKVPFIIYPNSCNNLKLKD-GRLSDIAPTILQLLGIKKPDEMTGSSLIV |
| 4MY4 Chain:A ((11-511)) | --KKPTALIILDGFANRESEHG-NAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETE--AKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDM-DGYAIITADHGNSDQVLTD-DDQPMTTHTTNPVPVIV---TKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MY4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -295297 for 4479 contacts (-65.9/contact) +
2D Compatibility (PS) -52072 + (NN) -11441 + (LL) 100
1D Compatibility (HY) -36400 + (ID) 10900
Total energy: -406010.0 ( -90.65 by residue)
QMean score : 0.522
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